Title
St. Mary's Academy of Caloocan City, Inc. vs. Henares
Case
G.R. No. 230138
Decision Date
Jan 13, 2021
St. Mary’s Academy challenged BIR’s RMO No. 20-2013 and RMC No. 52-2013, claiming tax exemption. RTC ruled in favor, but CA reversed, citing lack of jurisdiction; SC upheld CA, affirming CTA’s exclusive jurisdiction over tax issuances.
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Case Summary (G.R. No. 230138)

Petitioner’s Factual and Legal Position

St. Mary’s Academy asserted it is a non‑stock, non‑profit educational institution whose assets and revenues are actually, directly, and exclusively used for educational purposes and therefore exempt from internal revenue taxes. It relied on Revenue Ruling No. 159‑98 and Department of Finance Order No. 137‑87 to contend that it was not required to secure an authority to print official receipts and invoices, and that it should not be subject to the penalties imposed under the assailed BIR issuances.

BIR Issuances at Issue

Commissioner Jacinto‑Henares issued two principal administrative issuances: RMO No. 20‑2013 (July 2013), prescribing guidelines for processing tax exemption applications and re‑validation of tax‑exemption rulings and certificates under Section 30 of the National Internal Revenue Code (NIRC); and RMC No. 52‑2013 (August 2013), clarifying the validity of unused and unissued principal and supplementary receipts or invoices printed before January 18, 2013 and setting deadlines after which such receipts/invoices would no longer be valid, thereby requiring taxpayers to secure new authority to print.

Administrative Enforcement and Correspondence

On November 13, 2013, Revenue District Officer Detablan advised St. Mary’s Academy that its receipts were no longer valid as of October 31, 2013 per RMC No. 52‑2013 and demanded that the school produce authority to print or face penalties. Regional Director Florendo reinforced the position, explaining the requirement extended to supplementary receipts and was intended for recording, monitoring, and control; he also insisted on renewal of tax‑exemption rulings under RMO No. 20‑2013.

Petition to the Regional Trial Court

St. Mary’s Academy filed a petition for injunction and prohibition in the Regional Trial Court (RTC) of Quezon City, challenging RMO No. 20‑2013 and RMC No. 52‑2013 insofar as they applied to non‑stock, non‑profit educational institutions. The petition sought to enjoin respondents from implementing the issuances against the petitioner and prayed for declarations of unconstitutionality and illegality.

RTC Rulings

The RTC granted preliminary injunction (June 26, 2014) ordering respondents to refrain from implementing RMO No. 20‑2013 and RMC No. 52‑2013 against non‑stock, non‑profit educational institutions, subject to a P2,000,000 bond. On October 10, 2014 the RTC issued a resolution declaring RMO No. 20‑2013 unconstitutional and RMC No. 52‑2013 illegal insofar as they applied to non‑stock, non‑profit educational institutions, reasoning that the Commissioner lacked authority to amend the NIRC or to impose additional documentary requirements before an entity could enjoy tax‑exempt status.

Appeal to the Court of Appeals

Respondents appealed to the Court of Appeals. In its August 31, 2016 Decision, the Court of Appeals granted the appeal, set aside the RTC orders and resolution, and dismissed the petition. The CA concluded the Commissioner acted pursuant to her rule‑making power under Section 4 of the NIRC (a quasi‑legislative function), that injunction and prohibition are inapplicable to such quasi‑legislative acts, and that the writ of prohibition targets judicial, quasi‑judicial, or ministerial acts — not the promulgation of rules.

Petitioner’s Contentions on Supreme Court Review

Before the Supreme Court, petitioner argued the CA improperly resolved the appeal on procedural grounds and failed to address substantive constitutional issues. Petitioner invoked the courts’ expanded power of judicial review to challenge administrative rule‑making when grave abuse of discretion is alleged, contending that injunction and prohibition remain available remedies. Substantively, petitioner maintained RMC No. 52‑2013 and RMO No. 20‑2013 unlawfully burden tax‑exempt institutions by requiring new authorities to print receipts and imposing penalties, and that the RMO improperly required additional prerequisites not found in the Constitution or the NIRC.

Respondents’ Arguments Before the Court

Respondents, with the Office of the Solicitor General, defended the issuances as valid exercises of the Commissioner’s rule‑making authority intended for orderly recording, monitoring, and control. They argued these measures did not amend or alter the NIRC, did not erode tax‑exempt status, and did not impose impermissible additional conditions; rather, they provided a framework by which tax‑exempt status is substantiated and monitored to prevent abuse.

Threshold Jurisdictional Issue

The Supreme Court identified a threshold jurisdictional question: whether the RTC had authority to rule on the constitutionality and validity of the Commissioner’s administrative issuances pertaining to enforcement of the NIRC. The Court emphasized jurisdiction is conferred by law and may be raised at any stage. The relevant statutory provision is Section 7 of Republic Act No. 1125, as amended by Republic Act No. 9282, which vests the Court of Tax Appeals (CTA) with exclusive appellate jurisdiction to review, by appeal, decisions of the Commissioner of Internal Revenue in cases involving matters arising under the NIRC.

Precedential Treatment of Forum Competence

The Court reviewed prior decisions: Blaquera v. Rodriguez, Commissioner of Internal

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