Title
International Container Terminal Services, Inc. vs. City of Manila
Case
G.R. No. 185622
Decision Date
Oct 17, 2018
A corporation contested double taxation under Manila ordinances, seeking refunds for taxes paid. Courts ruled Section 196 of LGC applied, excusing procedural lapses due to City Treasurer's inaction.

Case Summary (G.R. No. 198662)

Procedural History

• RTC dismisses ICTSI’s certiorari for non-compliance with LGC § 195/187 requirements.
• CA sets aside RTC dismissal and remands.
• While remanded, Manila continues to collect Section 21(A) tax; ICTSI files amended petition for refund of all subsequent payments.
• RTC again dismisses under LGC § 195.
• ICTSI elevates to CTA Second Division (C.T.A. AC No. 11).

CTA Second Division Ruling

• Finds direct double taxation for Q1–Q3 1999; orders refund of ₱6,224,250.
• Denies claims for later periods: ICTSI failed to substantiate protest dated June 17, 2003 and comply with LGC § 195 protest requirements for each assessment.

CTA En Banc Decision

• Dismisses broader refund petition for lack of merit.
• Holds ICTSI chose § 195 remedy and cannot invoke § 196 post hoc.
• Emphasizes separate and distinct remedies under §§ 195 & 196; “paid under protest” on receipts is insufficient administrative protest.

Concurring and Dissenting Opinion

• J. Casanova: no notice of deficiency assessments after Q3 1999 => § 195 inapplicable
• ICTSI partially complied with § 196 via timely refund claims (2003–2007)
• Would have allowed refunds totaling ₱44,134,449.68

Issues on Review

  1. Jurisdiction of RTC/CTA over refund claims from Q4 1999 onward despite alleged non-payment of additional docket fees
  2. Proper remedy (LGC § 195 vs. § 196) for ICTSI’s post-Q3 1999 payments
  3. Compliance with procedural requirements to entitle ICTSI to the claimed refund

SC Ruling – Jurisdiction and Docket Fees

• Applies Sun Insurance Office, Ltd. v. Asuncion: initial correct payment vests jurisdiction; deficiency in subsequent docket fees does not divest jurisdiction but becomes lien on judgment
• Respondents estopped from belatedly raising fee issue before CTA En Banc; no evidence of bad faith by ICTSI

SC Ruling – Applicable Remedy

• Distinguishes § 195 (challenge to notice of deficiency assessment) from § 196 (recovery of erroneously or illegally collected tax without need for prior assessment)
• No notice of deficiency for Q4 1999 onward; Municipal License Receipts lack “deficiency” element => § 195 not triggered
• Refund claims for later periods must proceed under § 196

SC Ruling – Compliance with § 196

• ICTSI filed written claims for refund with City Treasurer on June 17,

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