Title
Commissioner of Internal Revenue vs. Court of Tax Appeals, 2nd Division
Case
G.R. No. 258947
Decision Date
Mar 29, 2022
QLDI contested CIR's tax assessment for 2010; CTA ruled CIR's collection right prescribed, upheld jurisdiction to enjoin collection, dismissing CIR's petition for wrong remedy.

Case Summary (G.R. No. 258947)

Key Dates

October 30, 2012 – Letter of Authority issued to QLDI
November 28, 2014 – Preliminary Assessment Notice (PAN) served
December 11, 2014 – Formal Assessment Notice/Formal Letter of Demand (FAN/FLD) mailed
March 3, 2015 – QLDI received Final Decision on Disputed Assessment (FDDA)
March 30, 2015 – QLDI requested reconsideration; denied February 4, 2020
June 30, 2020 – QLDI filed Petition for Review before CTA Division
June 7, 2021 – CTA Division Resolution canceling assessment for prescription
December 11, 2021 – CTA Division Resolution denying reconsideration and enjoining collection
March 29, 2022 – Supreme Court decision

Applicable Law

1987 Philippine Constitution (post-1990 decision);
National Internal Revenue Code of 1997 (NIRC), Sections 203 and 222;
Republic Act No. 1125, as amended by RA 9282 (CTA creation and appellate jurisdiction);
Rule 65, Rules of Court (certiorari and prohibition)

Factual Background

QLDI was audited for TY 2010. The BIR issued LOA on October 30, 2012, served PAN on November 28, 2014, and mailed FAN/FLD with detailed discrepancies on December 11, 2014. QLDI did not file a protest within 30 days. The CIR thereafter issued FDDA on disputed assessment, which QLDI received on March 3, 2015. A request for reconsideration was denied in February 2020, prompting the CIR to demand payment.

Proceedings Before the CTA Division

QLDI appealed the CIR’s February 4, 2020 Decision via Petition for Review. It moved for early resolution on prescription, asserting the CIR’s collection right expired five years from the FAN mailing (i.e., December 12, 2019). The CTA Division submitted the issue for resolution and, on June 7, 2021, held the CIR’s right to collect had lapsed, canceled the TY 2010 assessment, and granted QLDI’s motion. A reconsideration motion by the CIR was denied on December 11, 2021, and the CTA Division enjoined the CIR from collecting the taxes pending further order, upon QLDI’s posting of surety bond.

Issue

Whether the CIR’s right to collect the assessed deficiency taxes for TY 2010 had prescribed, and whether the CIR’s direct petition for certiorari and prohibition was the proper remedy.

Remedy Impropriety

The Supreme Court held that the CIR erred by invoking Rule 65 directly before the High Court. The June 7 and December 11, 2021 Resolutions were final and appealable to the CTA En Banc. An appeal, not certiorari or prohibition, was the correct remedy. A petition for certiorari lies only when there is no plain, speedy, and adequate remedy in the ordinary course of law.

Jurisdiction of the CTA

Section 7(a)(1) of RA 1125, as amended, grants the CTA exclusive appellate jurisdiction over disputed assessments, refunds, penalties, “or other matters” under the NIRC. The issue of prescription of the CIR’s right to collect taxes constitutes an “other matter” within CTA jurisdiction and is therefore properly before it.

Prescriptive Period for Collection

Section 203 of the NIRC provides a three-year limitation for both assessment and collection of taxes after the filing deadline. Under Section 222, when an assessment is validly issued within that three-year window, the CIR has an additional three years to collect; a five-year period applies only where a return is false or fraudulent or not filed. Because the FAN/FLD was mailed December 11, 2014, and the assessment was timely made, the c

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