Title
Commissioner of Internal Revenue vs. Bases Conversion and Development Authority
Case
G.R. No. 217898
Decision Date
Jan 15, 2020
BCDA, exempt from CWT on property sales under RA 7227, secures Php101.6M tax refund as SC affirms CTA ruling, citing special law precedence over NIRC.

Case Summary (G.R. No. 217898)

Petitioner

Commissioner of Internal Revenue, alleging lack of legal basis for refund of Creditable Withholding Tax (CWT)

Respondent

Bases Conversion and Development Authority, claiming exemption under its charter

Key Dates

– May 28, 2008: BCDA requested tax‐exemption certification
– July 31, 2008: Deeds of Absolute Sale executed; Net Group withheld and remitted ₱101,637,466.40 as CWT
– March 9, 2009: BCDA formally sought refund from BIR
– July 29, 2010: BCDA filed petition before CTA for refund
– September 13, 2013: CTA First Division granted refund
– December 16, 2014: CTA En Banc affirmed First Division
– April 15, 2015: CTA En Banc denied CIR’s motion for reconsideration
– January 15, 2020: Supreme Court decision

Applicable Law

– 1987 Philippine Constitution
– Republic Act No. 7227, as amended by RA 7917 (BCDA Charter)
– National Internal Revenue Code (NIRC), as amended (RA 8424, RA 9337, RA 10026)
– Revenue Regulation No. 2-98, Section 2.57.5 (CWT exemption for government instrumentalities)
– Revenue Regulation No. 6-85, Section 10 (requirements for refund claims)

Antecedents

BCDA contracted to sell military camp lands to an unincorporated joint venture (“Net Group”) for over ₱2 billion. The buyer withheld ₱101,637,466.40 CWT pending BCDA’s presentation of an exemption certificate. CIR did not act on BCDA’s request. After remittance of the withheld tax, BCDA pursued administrative and judicial claims for refund, invoking tax-exempt status under its charter.

CTA First Division Ruling

The CTA First Division, in a decision dated September 13, 2013, ordered CIR to refund the ₱101,637,466.40, finding BCDA entitled to exemption under its charter and procedural compliance with refund requirements.

CTA En Banc’s Ruling

On December 16, 2014, the CTA En Banc affirmed. It held that:

  1. RA 7227 (as amended) is a special law exempting BCDA’s sale proceeds from all taxes and fees.
  2. A general law (NIRC Section 27(C)) cannot impliedly repeal a special law.
  3. NIRC Section 32(B)(7)(b) and Revenue Regulation No. 2-98, Section 2.57.5 exclude national government instrumentalities from CWT.
  4. The sale proceeds are public funds appropriated by law, not BCDA income, hence not subject to withholding.
    The CTA En Banc denied CIR’s motion for reconsideration on April 15, 2015.

Issues Presented

Whether BCDA is exempt from CWT on the sale of its Global City properties, and whether its procedural compliance sufficed to merit refund.

Respondent’s Arguments

– Section 8 of RA 7227, as amended by RA 7917, appropriates sale proceeds for specified public uses and expressly exempts them from “all forms of taxes and fees.”
– Administrative Order No. 236 confirmed that sale proceeds are government funds to be remitted to the National Treasury and automatically appropriated.
– As a special law, RA 7227 remains effective despite the later-enacted NIRC and its withholding provisions.
– The transaction was excluded from BCDA’s income; hence, BCDA did not declare it in its return.

Petitioner’s Arguments

– NIRC Section 27(C) supersedes any earlier tax-exempt provision under RA 7227.
– BCDA failed to comply with Section 10 of RR 6-85 by not showing inclusion of the proceeds in gross income and by not p

    ...continue reading

    Analyze Cases Smarter, Faster
    Jur helps you analyze cases smarter to comprehend faster—building context before diving into full texts.