Title
Bishop Shinji Amari of Abiko Baptist Church vs. Villaflor, Jr.
Case
G.R. No. 224521
Decision Date
Feb 17, 2020
A dispute over Villaflor's removal as a missionary, deemed an ecclesiastical affair, led to the Supreme Court ruling civil courts lacked jurisdiction, upholding church autonomy.

Case Summary (G.R. No. 224521)

Petitioner

  • Bishop Shinji Amari of Abiko Baptist Church, represented by Shinji Amari
  • Missionary Baptist Institute and Seminary, represented by Joel P. Nepomuceno

Respondent

  • Ricardo R. Villaflor Jr.

Key Dates

  • November 24, 2011: Letter notifying Villaflor of removal as missionary, cancellation of church membership and recommendation
  • September 10, 2012: Complaint for illegal dismissal filed before NLRC
  • February 12, 2013: Labor Arbiter decision in favor of Villaflor
  • July 15, 2013: NLRC decision dismissing complaint for lack of jurisdiction
  • October 27, 2015: Court of Appeals decision reinstating Labor Arbiter ruling
  • February 17, 2020: Supreme Court decision

Applicable Law

  • 1987 Philippine Constitution (Art. III, Sec. 5 – separation of Church and State)
  • Labor Code provisions on illegal dismissal

Background of the Dispute

Villaflor served as a missionary of Abiko Baptist Church (sponsored in 1999) and as an instructor at the Seminary (appointed June 1999). In a November 24, 2011 letter, petitioners removed him as missionary, revoked his national missionary recommendation, and excluded him from church membership. They also demanded he vacate church-owned property. Villaflor challenged his removal as illegal dismissal for lack of due process and cause.

Labor Arbiter Decision

The Arbiter found an employer-employee relationship based on Villaflor’s Appointment Paper as seminary instructor, deeming his missionary status incidental. It ruled his removal illegal, ordering backwages, separation pay, damages, and attorney’s fees.

NLRC Ruling

The NLRC held it lacked jurisdiction, treating Villaflor’s dispute as a purely ecclesiastical affair (exclusion from church membership), not subject to civil remedy, and dismissed the complaint.

Court of Appeals Ruling

The CA reversed the NLRC, reinstating the Arbiter’s decision. It distinguished secular employment termination from ecclesiastical exclusion, found separate secular and religious incidents in the removal letter, and applied the four-fold test (selection, payment, control, dismissal) to conclude Villaflor was an employee of both church and seminary. It held no valid cause for termination.

Issue on Jurisdiction and Employment Relationship

Whether Villaflor’s removal as missionary—an ecclesiastical act—falls outside labor jurisdiction absent proof of an employer-employee relationship with petitioners.

Supreme Court Analysis on Ecclesiastical vs Secular Matter

Under the 1987 Constitution’s separation of Church and State and free-exercise clause, civil courts must abstain from “purely ecclesiastical affairs” (doctrine, worship, governance, membership). Termination of employment is ordinarily secular. Three acts in the removal letter were classified:

  1. Removal as missionary (to be examined)
  2. Cancellation of recommendation (ecclesiastical)
  3. Exclusion from membership (ecclesiastical)

Supreme Court Findings on Employer-Employee Relationship

Re-examining evidence under the four-fold test, the Court found:

  • Selection/Engagement: Appointment Paper concerned seminary instructor role, not missionary position. Missionary status arose from a separate Mission Policy Agreement.
  • Payment of Wages: Alleged “love gifts” came from American Baptist Association and church in

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