Title
Mindanao II Geothermal Partnership vs. Commissioner of Internal Revenue
Case
G.R. No. 193301
Decision Date
Mar 11, 2013
Mindanao I and II sought VAT refunds for zero-rated power sales to NPC. SC denied claims, ruling the two-year prescriptive period starts at quarter-end, not VAT return filing. Claims for Q1-Q2 2003 time-barred; Q3-Q4 claims inadequately substantiated.

Case Digest (G.R. No. 193301)
Expanded Legal Reasoning Model

Facts:

  • Parties and Background
    • Mindanao I & II Geothermal Partnerships are SEC-registered, VAT-registered block power production entities accredited under the Electric Power Industry Reform Act of 2000 (RA 9136).
    • Both entered into BOT contracts with PNOC-EDC to build, operate, and transfer geothermal plants, converting steam into electric energy delivered to NPC on behalf of PNOC-EDC.
  • VAT Zero-Rating and Refund Claims
    • RA 9136 amended the 1997 Tax Code to zero-rate sales of power by generation companies.
    • For 2003, Mindanao I & II filed quarterly VAT returns adopting the zero rate, resulting in unutilized input VAT credits.
    • In April 2005 they filed administrative refund/tax-credit claims with the CIR for all four quarters of 2003.
  • Proceedings Below
    • Mindanao II: CTA First Division (Sept 22, 2008) granted refund for Q3–Q4, denied Q1–Q2; Amended Decision (June 26, 2009) denied Q1–Q2 and maintained grant for Q3–Q4; CTA En Banc (Mar 10, 2010) affirmed in full.
    • Mindanao I: CTA Second Division (Oct 24, 2008) granted reduced refund for all four quarters; Resolution (Mar 10, 2009) denied reconsideration; CTA En Banc (May 31, 2010) affirmed in toto; Amended Decision (Nov 24, 2010) reversed and denied all claims.

Issues:

  • Prescriptive Period
    • Whether the two-year period to file an administrative VAT refund claim under Section 112(A) is counted from the close of the taxable quarter (Mirant) or from VAT return filing (Atlas).
    • Whether the 120 + 30-day mandatory waiting and appeal periods under Section 112(C) are jurisdictional, and the effect of BIR Ruling DA-489-03.
  • Incidental Transaction
    • Whether the sale of a fully depreciated Nissan Patrol was an isolated transaction (VAT-exempt) or incidental to zero-rated business (VATable) under Section 105.
  • Substantiation Requirements
    • Whether disallowed input taxes complied with invoicing and accounting rules (Sections 113(A), 237; RR 7-95).
  • Tax-Exemption Doctrine
    • Applicability of the strictissimi juris principle to tax refunds and exemptions.

Ruling:

  • (Subscriber-Only)

Ratio:

  • (Subscriber-Only)

Doctrine:

  • (Subscriber-Only)

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